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Yuhao Li

Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE
2021 · Jiangping He, Isaac A. Babarinde, et al. · Nature Communications · 200
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Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells
2018 · Jiangping He, Xiuling Fu, et al. · Nature Communications · 147
Models of global gene expression define major domains of cell type and tissue identity
2017 · Andrew P. Hutchins, Zhongzhou Yang, et al. · Nucleic Acids Research · 66
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Transposable element sequence fragments incorporated into coding and noncoding transcripts modulate the transcriptome of human pluripotent stem cells
2021 · Isaac A Babarinde, Gang Ma, et al. · Nucleic Acids Research · 46
Renal subcapsular delivery of PGE2 promotes kidney repair by activating endogenous Sox9+ stem cells
2021 · Shang Chen, Haoyan Huang, et al. · iScience · 40
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Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts
2019 · Isaac A. Babarinde, Yuhao Li, et al. · Computational and Structural Biotechnology Journal · 33
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Metabolic and epigenetic dysfunctions underlie the arrest of in vitro fertilized human embryos in a senescent-like state
2022 · Yang Yang, Liyang Shi, et al. · PLoS Biology · 31
Genomic and molecular control of cell type and cell type conversions
2017 · Xiuling Fu, Fangfang He, et al. · Cell Regeneration · 14
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The nuclear matrix stabilizes primed-specific genes in human pluripotent stem cells
2025 · Gang Ma, Xiuling Fu, et al. · Nature Cell Biology · 7
Restricting epigenetic activity promotes the reprogramming of transformed cells to pluripotency in a line-specific manner
2023 · Xiuling Fu, Qiang Zhuang, et al. · Cell Death Discovery · 7
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Human embryos arrest in a quiescent-like state characterized by metabolic and zygotic genome activation problems
2021 · Yang Yang, Liyang Shi, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 5
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Transposable element expression and sub-cellular dynamics during hPSC differentiation to endoderm, mesoderm, and ectoderm lineages
2025 · Isaac A. Babarinde, Xiuling Fu, et al. · Nature Communications · 3
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DPre: computational identification of differentiation bias and genes underlying cell type conversions
2019 · Simon Steffens, Xiuling Fu, et al. · Bioinformatics · 2
Transposable Element-Gene Splicing Modulates the Transcriptional Landscape of Human Pluripotent Stem Cells
2020 · Isaac A. Babarinde, Gang Ma, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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DeepEnzyKat: Turnover number prediction through enzyme-substrate interaction modeling and adaptive expert ensembles
2026 · Guangran Zhang, Yujing Zhao, et al. · ChemRxiv
Metagenomic prediction of methane emissions in sheep using single- and multi-matrix BLUP models with taxonomic and functional microbial features
2026 · Yuhao Li, Chian Teng Ong, et al. · bioRxiv (Cold Spring Harbor Laboratory)
Short communication: Oral microbiome as a potential proxy for grazing livestock methane emissions
2026 · Chian Teng Ong, Tony Cavallaro, et al. · bioRxiv (Cold Spring Harbor Laboratory)
Short communication: oral microbiome as a potential proxy for methane emissions in grazing tropical composite beef cattle
2026 · Chian Teng Ong, Tony Cavallaro, et al. · Journal of Animal Science
Modulating the epigenetic state promotes the reprogramming of transformed cells to pluripotency in a line-specific manner
2022 · Xiuling Fu, Qiang Zhuang, et al. · bioRxiv (Cold Spring Harbor Laboratory)
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Works count: 19
Citation count: 602
H-index: 8
I10-index: 8
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