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Author

Shun Liu

Observed names: Liu, Shun, Shun LIU
ORCID: 0000-0001-8850-9079
Observed ORCID: 0000-0001-8850-9079
OpenAlex ID: A5100358374
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
2013 · Jun-Hao Li, Shun Liu, et al. · Nucleic Acids Research · 5,616
RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data
2017 · Jia-Jia Xuan, Wen-Ju Sun, et al. · Nucleic Acids Research · 425
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ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data
2016 · Ke-Ren Zhou, Shun Liu, et al. · Nucleic Acids Research · 413
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RNA demethylation increases the yield and biomass of rice and potato plants in field trials
2021 · Qiong Yu, Shun Liu, et al. · Nature Biotechnology · 275
m6A RNA modifications are measured at single-base resolution across the mammalian transcriptome
2022 · Lulu Hu, Shun Liu, et al. · Nature Biotechnology · 273
Quantitative sequencing using BID-seq uncovers abundant pseudouridines in mammalian mRNA at base resolution
2022 · Qing Dai, Li-Sheng Zhang, et al. · Nature Biotechnology · 245
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deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
2015 · Ling-Ling Zheng, Jun-Hao Li, et al. · Nucleic Acids Research · 225
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Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination
2023 · Yu-Lan Xiao, Shun Liu, et al. · Nature Biotechnology · 201
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Stabilization of ERK-Phosphorylated METTL3 by USP5 Increases m6A Methylation
2020 · Hui-Lung Sun, Allen C. Zhu, et al. · Molecular Cell · 198
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data
2015 · Wen-Ju Sun, Jun-Hao Li, et al. · Nucleic Acids Research · 197
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tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers
2016 · Ling-Ling Zheng, Wei-Lin Xu, et al. · Nucleic Acids Research · 142
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Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development
2018 · Shu-Juan Xie, Jun-Hao Li, et al. · Cell Death and Differentiation · 125
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REPIC: a database for exploring the N6-methyladenosine methylome
2020 · Shun Liu, Allen Zhu, et al. · Genome biology · 101
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Discovery of Protein–lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets
2015 · Jun-Hao Li, Shun Liu, et al. · Frontiers in Bioengineering and Biotechnology · 87
Dynamics of RNA localization to nuclear speckles are connected to splicing efficiency
2024 · Jinjun Wu, Yu Xiao, et al. · Science Advances · 77
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m6A-SAC-seq for quantitative whole transcriptome m6A profiling
2022 · Ruiqi Ge, Chang Ye, et al. · Nature Protocols · 77
miR‐372 and miR‐373 enhance the stemness of colorectal cancer cells by repressing differentiation signaling pathways
2018 · Lu‐Qin Wang, Peng Yu, et al. · Molecular Oncology · 70
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RBM33 is a unique m6A RNA-binding protein that regulates ALKBH5 demethylase activity and substrate selectivity
2023 · Fang Yu, Allen C. Zhu, et al. · Molecular Cell · 67
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dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease
2017 · Ling-Ling Zheng, Ke-Ren Zhou, et al. · Nucleic Acids Research · 59
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snoRNA-facilitated protein secretion revealed by transcriptome-wide snoRNA target identification
2024 · Bei Liu, Tong Wu, et al. · Cell · 56
Quantitative profiling of m6A at single base resolution across the life cycle of rice and Arabidopsis
2024 · Guanqun Wang, Haoxuan Li, et al. · Nature Communications · 54
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Profiling of RNA-binding protein binding sites by in situ reverse transcription-based sequencing
2024 · Yu Xiao, Yan-Ming Chen, et al. · Nature Methods · 39
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StarScan: a web server for scanning small RNA targets from degradome sequencing data
2015 · Shun Liu, Jun-Hao Li, et al. · Nucleic Acids Research · 26
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Quantitative RNA pseudouridine maps reveal multilayered translation control through plant rRNA, tRNA and mRNA pseudouridylation
2025 · Haoxuan Li, Guanqun Wang, et al. · Nature Plants · 24
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ColorCells: a database of expression, classification and functions of lncRNAs in single cells
2020 · Ling-Ling Zheng, Jing-Hua Xiong, et al. · Briefings in Bioinformatics · 22
Works count: 49
Citation count: 9,220
H-index: 24
I10-index: 31
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