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Yifan Song

MCCE2: Improving protein pKa calculations with extensive side chain rotamer sampling
2009 · Yifan Song, Junjun Mao, et al. · Journal of Computational Chemistry · 243
3′ UTR lengthening as a novel mechanism in regulating cellular senescence
2018 · Meng Chen, Guoliang Lyu, et al. · Genome Research · 111
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Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations
2006 · M.R. Gunner, Junjun Mao, et al. · Biochimica et Biophysica Acta (BBA) - Bioenergetics · 97
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Recent advances in transition metal borides for electrocatalytic oxygen evolution reaction
2020 · Dongdong Wang, Yifan Song, et al. · Journal of Electroanalytical Chemistry · 71
Calculated Proton Uptake on Anaerobic Reduction of CytochromecOxidase: Is the Reaction Electroneutral?
2006 · Yifan Song, Ekaterina Michonova-Alexova, et al. · Biochemistry · 67
Calculation of Proton Transfers in Bacteriorhodopsin bR and M Intermediates
2003 · Yifan Song, Junjun Mao, et al. · Biochemistry · 67
The gatekeeper residue and beyond: homologous calcium-dependent protein kinases as drug development targets for veterinarian Apicomplexa parasites
2014 · KATELYN R. KEYLOUN, MOLLY C. REID, et al. · Parasitology · 58
Using Multiconformation Continuum Electrostatics to Compare Chloride Binding Motifs in α-Amylase, Human Serum Albumin, and Omp32
2009 · Yifan Song, M.R. Gunner · Journal of Molecular Biology · 42
Cu nanoclusters on N-doped carbon nanotubes as efficient electrocatalyst for oxygen reduction reaction
2022 · Yifan Song, Tianyu Zhang, et al. · Applied Surface Science · 32
Electrostatic Environment of Hemes in Proteins: pKas of Hydroxyl Ligands
2006 · Yifan Song, Junjun Mao, et al. · Biochemistry · 31
Halorhodopsin pumps Cl – and bacteriorhodopsin pumps protons by a common mechanism that uses conserved electrostatic interactions
2014 · Yifan Song, M. R. Gunner · Proceedings of the National Academy of Sciences · 26
Exploring conformational changes coupled to ionization states using a hybrid Rosetta‐MCCE protocol
2011 · Yifan Song · Proteins Structure Function and Bioinformatics · 15
Pseudorevertants of a Semliki Forest Virus Fusion-Blocking Mutation Reveal a Critical Interchain Interaction in the Core Trimer
2010 · Catherine Y. Liu, Christen Besanceney, et al. · Journal of Virology · 8
Iridium-Catalyzed 1,3-Rearrangement of Allylic Ethers
2023 · Fei Li, Jinbao Ren, et al. · Organic Letters · 4
N, S Co‐Doped Carbon Nanotubes Loaded With Cu Nanoclusters For Efficient Oxygen Reduction Reaction
2024 · Xiaoli Yan, Yu Wang, et al. · ChemPhysChem · 2
Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, staphylococcus aureus at 2.25 angstrom resolution
2015 · F. Zhang, Y. Song, et al. · Worldwide Protein Data Bank
Electrostatic Environment of Hemes in Proteins: pKas of Hydroxyl Ligands
2006 · Yifan Song, Junjun Mao, et al. · Biochemistry
Studying proton pumping mechanism of bacteriorhodopsin and cytochrome c oxidase with multi-conformation continuum electrostatics
2006 · Yifan Song
Works count: 18
Citation count: 874
H-index: 12
I10-index: 12
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