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Shu‐Hwa Chen

cytoHubba: identifying hub objects and sub-networks from complex interactome
2014 · Chia-Hao Chin, Shu-Hwa Chen, et al. · BMC Systems Biology · 6,583
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Hubba: hub objects analyzer—a framework of interactome hubs identification for network biology
2008 · Chung-Yen Lin, Chia-Hao Chin, et al. · Nucleic Acids Research · 287
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Characterization of FN1–FGFR1 and novel FN1–FGF1 fusion genes in a large series of phosphaturic mesenchymal tumors
2016 · Jen-Chieh Lee, Sheng-Yao Su, et al. · Modern Pathology · 185
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Identification of a novel FN1–FGFR1 genetic fusion as a frequent event in phosphaturic mesenchymal tumour
2014 · Jen‐Chieh Lee, Yung‐Ming Jeng, et al. · The Journal of Pathology · 161
High-throughput profiling of influenza A virus hemagglutinin gene at single-nucleotide resolution
2014 · Nicholas C. Wu, Arthur P. Young, et al. · Scientific Reports · 149
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Over-expression of AURKA, SKA3 and DSN1 contributes to colorectal adenoma to carcinoma progression
2016 · Tzu-Po Chuang, Jaw-Yuan Wang, et al. · Oncotarget · 77
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AI4AVP: an antiviral peptides predictor in deep learning approach with generative adversarial network data augmentation
2022 · Tzu-Tang Lin, Yih-Yun Sun, et al. · Bioinformatics Advances · 70
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Cloning of Two Crustacean Hyperglycemic Hormone Isoforms in Freshwater Giant Prawn ( Macrobrachium rosenbergii ): Evidence of Alternative Splicing
2004 · Shu-Hwa Chen, Chung-Yen Lin, et al. · Marine Biotechnology · 67
Compartment‐specific transcriptomics in a reef‐building coral exposed to elevated temperatures
2014 · Anderson B. Mayfield, Yu‐Bin Wang, et al. · Molecular Ecology · 61
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SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies
2019 · Li-An Yang, Yu-Jung Chang, et al. · BMC Genomics · 59
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Intelligent De Novo Design of Novel Antimicrobial Peptides against Antibiotic-Resistant Bacteria Strains
2023 · Tzu-Tang Lin, Li-Yen Yang, et al. · International Journal of Molecular Sciences · 57
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The effect of red light and far-red light conditions on secondary metabolism in Agarwood
2015 · Tony Chien-Yen Kuo, Chuan-Hung Chen, et al. · BMC Plant Biology · 49
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A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles
2010 · Chia-Hao Chin, Shu-Hwa Chen, et al. · BMC Bioinformatics · 48
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PALM: A Paralleled and Integrated Framework for Phylogenetic Inference with Automatic Likelihood Model Selectors
2009 · Shu-Hwa Chen, Sheng-Yao Su, et al. · PLoS ONE · 46
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Dual‐compartmental transcriptomic + proteomic analysis of a marine endosymbiosis exposed to environmental change
2016 · Anderson B. Mayfield, Yu‐Bin Wang, et al. · Molecular Ecology · 42
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Modeling spinocerebellar ataxias 2 and 3 with iPSCs reveals a role for glutamate in disease pathology
2019 · Ching-Yu Chuang, Chih-Chao Yang, et al. · Scientific Reports · 41
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A metagenomics study of hexabromocyclododecane degradation with a soil microbial community
2022 · Yi-Jie Li, Chia-Hsien Chuang, et al. · Journal of Hazardous Materials · 40
The degradation mechanisms of Rhodopseudomonas palustris toward hexabromocyclododecane by time-course transcriptome analysis
2021 · Yi-Jie Li, Reuben Wang, et al. · Chemical Engineering Journal · 35
De Novo Assembly of the Whole Transcriptome of the Wild Embryo, Preleptocephalus, Leptocephalus, and Glass Eel of Anguilla japonica and Deciphering the Digestive and Absorptive Capacities during Early Development
2015 · Hsiang-Yi Hsu, Shu-Hwa Chen, et al. · PLoS ONE · 35
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Revealing the compositions of the intestinal microbiota of three Anguillid eel species using 16S rDNA sequencing
2018 · Hsiang-Yi Hsu, Fang-Chi Chang, et al. · Aquaculture Research · 33
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Piwi reduction in the aged niche eliminates germline stem cells via Toll-GSK3 signaling
2020 · Kun-Yang Lin, Wen-Der Wang, et al. · Nature Communications · 31
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UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/ genomic level
2010 · Shu-Hwa Chen, Chen-Zen Lo, et al. · BMC Genomics · 23
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Discovering Novel Antimicrobial Peptides in Generative Adversarial Network
2021 · Tzu-Tang Lin, Li-Yen Yang, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 21
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Using high-throughput transcriptome sequencing to investigate the biotransformation mechanism of hexabromocyclododecane with Rhodopseudomonas palustris in water
2019 · Reuben Wang, Chung-Yen Lin, et al. · The Science of The Total Environment · 20
A gene profiling deconvolution approach to estimating immune cell composition from complex tissues
2018 · Shu-Hwa Chen, Wen-Yu Kuo, et al. · BMC Bioinformatics · 20
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Works count: 64
Citation count: 8,410
H-index: 22
I10-index: 34
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