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Varun Shamanna

Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch
2021 · Silvia Argimón, Sophia David, et al. · Clinical Infectious Diseases · 205
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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
2023 · Megan E Carey, Zoe A Dyson, et al. · eLife · 129
High-Resolution Genomic Profiling of Carbapenem-Resistant Klebsiella pneumoniae Isolates: A Multicentric Retrospective Indian Study
2021 · Geetha Nagaraj, Varun Shamanna, et al. · Clinical Infectious Diseases · 58
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Clones and Clusters of Antimicrobial-ResistantKlebsiellaFrom Southwestern Nigeria
2021 · Ayorinde O Afolayan, Anderson O Oaikhena, et al. · Clinical Infectious Diseases · 47
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Complexity of Genomic Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Isolates in Colombia Urges the Reinforcement of Whole Genome Sequencing-Based Surveillance Programs
2021 · Sandra Yamile Saavedra, Johan Fabian Bernal, et al. · Clinical Infectious Diseases · 46
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Circulation of Third-Generation Cephalosporin Resistant Salmonella Typhi in Mumbai, India
2021 · Silvia Argimón, Geetha Nagaraj, et al. · Clinical Infectious Diseases · 36
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Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance
2021 · Mihir Kekre, Stefany Alejandra Arevalo, et al. · Clinical Infectious Diseases · 35
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Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae
2024 · Kara K. Tsang, Margaret M.C. Lam, et al. · Microbial Genomics · 34
Geographical migration and fitness dynamics of Streptococcus pneumoniae
2024 · Sophie Belman, Noémie Lefrancq, et al. · Nature · 34
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Genome Sequencing Identifies Previously Unrecognized Klebsiella pneumoniae Outbreaks in Neonatal Intensive Care Units in the Philippines
2021 · Celia C Carlos, Melissa Ana L Masim, et al. · Clinical Infectious Diseases · 33
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Train-the-Trainer as an Effective Approach to Building Global Networks of Experts in Genomic Surveillance of Antimicrobial Resistance (AMR)
2021 · Monica Abrudan, Alice Matimba, et al. · Clinical Infectious Diseases · 28
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Overcoming Data Bottlenecks in Genomic Pathogen Surveillance
2021 · Ayorinde O Afolayan, Johan Fabian Bernal, et al. · Clinical Infectious Diseases · 27
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Geographical distribution, disease association and diversity of Klebsiella pneumoniae K/L and O antigens in India: roadmap for vaccine development
2024 · Varun Shamanna, Srikanth Srinivas, et al. · Microbial Genomics · 22
Implementing Whole-Genome Sequencing for Ongoing Surveillance of Antimicrobial Resistance: Exemplifying Insights IntoKlebsiella pneumoniae
2021 · David M Aanensen, Celia C Carlos, et al. · Clinical Infectious Diseases · 14
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Good Financial Grant Practice: A Tool for Developing and Demonstrating Institutional Financial and Grant Management Capacity in Global Health
2021 · Harry J Harste, Genevieve Kiff, et al. · Clinical Infectious Diseases · 14
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Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi
2025 · Danielle J. Ingle, Jane Hawkey, et al. · Genome Medicine · 13
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Novel multidrug-resistant sublineages of Staphylococcus aureus clonal complex 22 discovered in India
2023 · Monica I. Abrudan, Varun Shamanna, et al. · mSphere · 13
Molecular dissection of carbapenem-resistant Acinetobacter baumannii circulating in Indian hospitals using Whole Genome Sequencing
2021 · Steffimol Rose, Varun Shamanna, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 6
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Molecular characterisation of carbapenem-resistant Klebsiella pneumoniae clinical isolates: preliminary experience from a tertiary care teaching hospital in the Himalayas
2021 · Mohit Bhatia, Varun Shamanna, et al. · Transactions of the Royal Society of Tropical Medicine and Hygiene · 4
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Overcoming Data Bottlenecks In Genomic Pathogen Surveillance
2021 · Ayorinde O. Afolayan, Johan Fabian Bernal, et al. · OSF Preprints (OSF Preprints) · 4
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Assessment of in vitro colistin susceptibility of carbapenem-resistant clinical Gram-negative bacterial isolates using four commercially available systems & Whole-genome sequencing: A diagnostic accuracy study
2023 · Mohit Bhatia, Varun Shamanna, et al. · Diagnostic Microbiology and Infectious Disease · 3
An insight into whole genome sequencing data of methicillin-resistant Staphylococcus aureus circulating in a teaching hospital in North India
2023 · Mohit Bhatia, Varun Shamanna, et al. · Indian Journal of Medical Microbiology · 3
Ciprofloxacin resistance in Klebsiella pneumoniae: phenotype prediction from genotype and global distribution of resistance determinants
2026 · Kara K. Tsang, Iana Amke, et al. · Genome Medicine · 2
Tracking the evolution of emerging serotypes and antibiotic resistance patterns in Streptococcus pneumoniae among Indian adults using high-throughput genome sequencing
2025 · Geetha Nagaraj, Varun Shamanna, et al. · BMC Infectious Diseases · 2
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Diverse Genetic Background of Multidrug Resistant Pseudomonas Aeruginosa Circulating in India
2023 · N. Geetha, M. Bhaskaran, et al. · International Journal of Infectious Diseases · 2
Works count: 50
Citation count: 826
H-index: 14
I10-index: 17
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