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Joseph Boen

Optimizing generative AI by backpropagating language model feedback
2025 · Mert Yuksekgonul, Federico Bianchi, et al. · Nature · 85
TextGrad: Automatic "Differentiation" via Text
2024 · Yuksekgonul, Mert, Bianchi, Federico, et al. · arXiv (Cornell University) · 12
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Accurate Prediction of Antimicrobial Susceptibility for Point‐of‐Care Testing of Urine in Less than 90 Minutes via iPRISM Cassettes
2023 · Xin Jiang, Talya Borkum, et al. · Advanced Science · 12
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Partitioning Quantum Chemistry Simulations with Clifford Circuits
2023 · Philipp Schleich, Joseph Boen, et al. · Journal of Chemical Theory and Computation · 12
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Dynamically generated decoherence-free subspaces and subsystems on superconducting qubits
2024 · Gregory Quiroz, Bibek Pokharel, et al. · Reports on Progress in Physics · 11
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A deep learning approach for generating intracranial pressure waveforms from extracranial signals routinely measured in the intensive care unit
2024 · Shiker S. Nair, Alina Guo, et al. · Computers in Biology and Medicine · 10
Spatial multi-omics and deep learning reveal fingerprints of immunotherapy response and resistance in hepatocellular carcinoma
2025 · Zhenqin Wu, Joseph Boen, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 8
Integrating diverse statistical methods to analyse stage-discriminatory cell interactions in colorectal neoplasia
2024 · Joshua A. Bull, Eoghan J. Mulholland, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 8
Inferring copy number variation from gene expression data: methods, comparisons, and applications to oncology
2021 · Joseph Boen, Joel P. Wagner, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 6
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OctoTools: A Multi-Agent Framework with Extensible Tools for Complex Reasoning
2026 · Pan Lu, Bowen Chen, et al. · Annual Meeting of the Association for Computational Linguistics (ACL) · 5
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Learning single-cell spatial context through integrated spatial multiomics with CORAL
2025 · Siyu He, Matthew Bieniosek, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 5
OctoTools: An Agentic Framework with Extensible Tools for Complex Reasoning
2025 · Lu, Pan, Chen, Bowen, et al. · arXiv (Cornell University) · 4
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A real-time deep learning approach for inferring intracranial pressure from routinely measured extracranial waveforms in the intensive care unit
2024 · Shiker S. Nair, Alina Guo, et al. · Journal of Critical Care · 4
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Therapeutic manipulation and spatial quantification of the tumor microenvironment in colorectal cancer
2026 · Eoghan J. Mulholland-Illingworth, Joshua W. Moore, et al. · iScience · 2
478 Spatial omics and deep learning define an immunotherapy resistance niche in hepatocellular carcinoma
2025 · Alexandro E Trevino, Zhenqin Wu, et al. · Regular and Young Investigator Award Abstracts · 2
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Disentangling Reasoning and Knowledge in Medical Large Language Models
2025 · Thapa, Rahul, Wu, Qingyang, et al. · arXiv (Cornell University) · 1
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Multi-scale Multi-modal Integration of Spatial Omics via Deep Generative Model with CORAL
2026 · He, Siyu, Bieniosek, Matthew, et al. · Zenodo (CERN European Organization for Nuclear Research)
Agentic and Generative AI for Drug Discovery
2026 · Jake Silberg, Peter Eckmann, et al. · Circulation
OctoTools: A Multi-Agent Framework with Extensible Tools for Complex Reasoning
2026 · Association for Computational Linguistics 2026, Boen, Joseph, et al. · Underline Science Inc.
CORAL: Multi-scale Multi-modal Integration of Spatial Omics via Deep Generative Model
2025 · Siyu He, Matthew Bieniosek, et al. · Figshare
Feedback Descent: Open-Ended Text Optimization via Pairwise Comparison
2025 · Lee, Yoonho, Boen, Joseph, et al. · arXiv (Cornell University)
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1415 Multimodal spatial signatures of immunotherapy response in hepatocellular carcinoma
2024 · Alexandro E Trevino, Zhenqin Wu, et al. · Regular and Young Investigator Award Abstracts
Accurate Prediction of Antimicrobial Susceptibility for Point‐of‐Care Testing of Urine in Less than 90 Minutes via iPRISM Cassettes (Adv. Sci. 31/2023)
2023 · Xin Jiang, Talya Borkum, et al. · Advanced Science
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Creation, verification, and scalability of decoherence-free subspaces and noiseless subsystems on superconducting qubits
2021 · Gregory Quiroz, Bibek Pokharel, et al. · Bulletin of the American Physical Society
Works count: 25
Citation count: 187
H-index: 8
I10-index: 6
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