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Author

Ben Langmead

Observed names: B. Langmead, Benjamin Langmead, Benjamin T. Langmead, Langmead, Ben, Langmead, Benjamin
ORCID: 0000-0003-2437-1976
Observed ORCID: 0000-0003-2437-1976
OpenAlex ID: A5009556658
Fast gapped-read alignment with Bowtie 2
2012 · Ben Langmead, Steven L Salzberg · Nature Methods · 55,944
HISAT: a fast spliced aligner with low memory requirements
2015 · Daehwan Kim, Ben Langmead, et al. · Nature Methods · 23,894
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
2009 · Ben Langmead, Cole Trapnell, et al. · Genome biology · 21,900
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Improved metagenomic analysis with Kraken 2
2019 · Derrick E. Wood, Jennifer Lu, et al. · Genome biology · 7,330
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Tackling the widespread and critical impact of batch effects in high-throughput data
2010 · Jeffrey T. Leek, Robert B. Scharpf, et al. · Nature Reviews Genetics · 2,233
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Aligning Short Sequencing Reads with Bowtie
2010 · Ben Langmead · Current Protocols in Bioinformatics · 1,299
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Increased methylation variation in epigenetic domains across cancer types
2011 · Kasper Daniel Hansen, Winston Timp, et al. · Nature Genetics · 1,061
Scaling read aligners to hundreds of threads on general-purpose processors
2018 · Ben Langmead, Christopher Wilks, et al. · Bioinformatics · 965
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Ballgown bridges the gap between transcriptome assembly and expression analysis
2015 · Alyssa C Frazee, Geo Pertea, et al. · Nature Biotechnology · 866
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Metagenome analysis using the Kraken software suite
2022 · Jennifer Lu, Natalia Rincon, et al. · Nature Protocols · 802
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
2012 · Kasper D Hansen, Benjamin Langmead, et al. · Genome biology · 801
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Searching for SNPs with cloud computing
2009 · Ben Langmead, Michael C Schatz, et al. · Genome biology · 490
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Reproducible RNA-seq analysis using recount2
2017 · Leonardo Collado-Torres, Abhinav Nellore, et al. · Nature Biotechnology · 448
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Reversible switching between epigenetic states in honeybee behavioral subcastes
2012 · Brian R Herb, Florian Wolschin, et al. · Nature Neuroscience · 338
Cloud-scale RNA-sequencing differential expression analysis with Myrna
2010 · Ben Langmead, Kasper D Hansen, et al. · Genome biology · 320
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Cloud computing for genomic data analysis and collaboration
2018 · Ben Langmead, Abhinav Nellore · Nature Reviews Genetics · 316
Polyester : simulating RNA-seq datasets with differential transcript expression
2015 · Alyssa C. Frazee, Andrew E. Jaffe, et al. · Bioinformatics · 316
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Cloud computing and the DNA data race
2010 · Michael C Schatz, Ben Langmead, et al. · Nature Biotechnology · 285
recount3: summaries and queries for large-scale RNA-seq expression and splicing
2021 · Christopher Wilks, Shijie C. Zheng, et al. · Genome biology · 269
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Lighter: fast and memory-efficient sequencing error correction without counting
2014 · Li Song, Liliana Florea, et al. · Genome biology · 261
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ReCount: A multi-experiment resource of analysis-ready RNA-seq gene count datasets
2011 · Alyssa C Frazee, Ben Langmead, et al. · BMC Bioinformatics · 157
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Alignment of Next-Generation Sequencing Reads
2015 · Knut Reinert, Ben Langmead, et al. · Annual Review of Genomics and Human Genetics · 127
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Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization
2013 · Kasper D. Hansen, Sarven Sabunciyan, et al. · Genome Research · 127
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Comprehensive multi-omic profiling of somatic mutations in malformations of cortical development
2023 · Changuk Chung, Xiaoxu Yang, et al. · Nature Genetics · 123
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Dashing: fast and accurate genomic distances with HyperLogLog
2019 · Daniel N Baker, Ben Langmead · Genome biology · 122
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Works count: 181
Citation count: 123,000
H-index: 42
I10-index: 76
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