Award

Systematic Models for Biological Systems Engineering Training Network

Description: Mathematical, computational models are central in biomedical and biological systems engineering; models enable (i) mechanistically justifying experimental results via current knowledge and (ii) generating new testable hypotheses or novel intervention methods. SyMBioSys is a joint academic/industrial training initiative supporting the convergence of engineering, biological and computational sciences. The consortium's mutual goal is developing a new generation of innovative and entrepreneurial early-stage researchers (ESRs) to develop and exploit cutting-edge dynamic (kinetic) mathematical models for biomedical and biotechnological applications. SyMBioSys integrates: (i) six academic beneficiaries with a strong record in biomedical and biological systems engineering research, these include four universities and two research centres; (ii) four industrial beneficiaries including key players in developing simulation software for process systems engineering, metabolic engineering and industrial biotechnology; (iii) three partner organisations from pharmaceutical, biotechnological and entrepreneurial sectors. SyMBioSys is committed to supporting the establishment of a Biological Systems Engineering research community by stimulating programme coordination via joint activities. The main objectives of this initiative are: * Developing new algorithms and methods for reverse engineering and identifying dynamic models of biosystems and bioprocesses * Developing new model-based optimization algorithms for exploiting dynamic models of biological systems (e.g. predicting behavior in biological networks, identifying design principles and selecting optimal treatment intervention) * Developing software tools, implementing the preceding novel algorithms, using state-of-the-art software engineering practices to ensure usability in biological systems engineering research and practice * Applying the new algorithms and software tools to biomedical and biological test cases.
Amount: €3,805,000
Funding type: fellowship
Funder scheme: H2020 - MSCA-ITN-ETN
Start date: 2015-09-01
End date: 2019-08-31
Institution: IMPERIAL COLLEGE OF SCIENCE TECHNOLOGY AND MEDICINE
Funded outputs count: 37
Funder award ID: 675585
OpenAlex ID: G3585592020
2024 · Michail E. Klontzas, Spyros I. Vernardis, et al. · Journal of Functional Biomaterials · 11
2023 · Boris V. Sorokin, Marina Pivetta, et al. · Advanced Functional Materials · 7
2022 · Marco Sciacovelli, Aurelien Dugourd, et al. · Nature Communications · 56
2021 · Marco Sciacovelli, Aurelien Dugourd, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 5
2021 · Maria Masid, Vassily Hatzimanikatis · Current Opinion in Systems Biology · 7
2021 · Kasparas Petkevicius, Guillaume Bidault, et al. · Molecular Metabolism · 24
2021 · Aurelien Dugourd, Christoph Kuppe, et al. · Molecular Systems Biology · 147
2020 · Nikolaos Tsiantis, Julio R. Banga · BMC Bioinformatics · 20
2020 · Joana Saldida, Anna Paola Muntoni, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 5
2020 · Maria Masid, Meric Ataman, et al. · Nature Communications · 39
2020 · Enio Gjerga, Panuwat Trairatphisan, et al. · Bioinformatics · 35
2020 · Marco Manzoni, Maddalena M. Bolognesi, et al. · Scientific Reports · 24
2019 · Nikolaus Berndt, Antje Egners, et al. · British Journal of Cancer · 26
2019 · Francisca Monteiro, Georg Hubmann, et al. · Molecular Systems Biology · 54
2019 · Ferenc Tajti, Christoph Kuppe, et al. · Kidney International Reports · 33
2019 · Anika Liu, Panuwat Trairatphisan, et al. · npj Systems Biology and Applications · 149
2019 · Alexander Schäfer, Enio Gjerga, et al. · Molecular Systems Biology · 14
2019 · Aurelien Dugourd, Julio Saez-Rodriguez · Current Opinion in Systems Biology · 53
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