Award

VIOLIN 2.0: Vaccine Information and Ontology LInked kNowledgebase

Description: Project Narrative (Relevance of this Research to Public Health) To address the huge challenge to capture and integrate heterogeneous vaccine knowledge in an efficient manner, this project will develop VIOLIN 2.0, a new generation comprehensive vaccine knowledgebase that will cover a wide range of knowledge covering the full vaccine life cycle. We will develop advanced informatics technologies, including literature mining and machine learning tools, web interfaces, databases, and knowledge graphs to build the knowledgebase. Our research will lead to ontology-based standardization and integration of vaccine information, and support deep mechanism analysis and rational vaccine design.
Funding type: cooperative_agreement
Funder scheme: U24
Start date: 2022-08-19
End date: 2027-05-31
Investigator: YONGQUN HE
Institution: UNIVERSITY OF MICHIGAN AT ANN ARBOR
Funded outputs count: 58
Funder award ID: U24AI171008
OpenAlex ID: G9000915926
2026 · Jianfu Li, L. Frank Huang, et al. · bioRxiv (Cold Spring Harbor Laboratory)
2026 · Yongqun He, Anthony Huffman, et al. · Journal of Biomedical Semantics · 2
2026 · Sayed Asaduzzaman, Benu Bansal, et al. · bioRxiv (Cold Spring Harbor Laboratory)
2026 · Joshua Monickaraj, Hasin Rehana, et al. · Frontiers in Cellular and Infection Microbiology
2026 · Jie Zheng, Asiyah Yu Lin, et al. · Scientific Data · 3
2026 · Anna He, Katelyn Hur, et al. · Frontiers in Pharmacology · 1
2025 · Pengze Li, Yutong Hu, et al. · Computational and Structural Biotechnology Journal · 3
2025 · Yuping Zheng, Yongqun He · bioRxiv (Cold Spring Harbor Laboratory) · 2
2025 · Yuanyi Pan, Warren Manuel, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
2025 · Feng-Yu (Leo) Yeh, Matthew Asato, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
2025 · John Beverley, Shane Babcock, et al. · Journal of Biomedical Semantics
2025 · Zhigang Wang, Xingxian Li, et al. · Journal of Biomedical Semantics · 7
2025 · Anthony Huffman, Mehul Gautam, et al. · Frontiers in Cellular and Infection Microbiology · 5
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