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P01DK078669

Funded outputs count: 108
Funder award ID: P01DK078669
OpenAlex ID: G7672226153
Acute perioperative alterations in metabolism: A pilot study using mass spectrometry–based metabolomics
2024 · Keri A. Seymour, Madison Strain, et al. · Surgery · 2
Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases
2023 · Gibraan Rahman, Daniel McDonald, et al. · Genes · 24
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Evaluating immune response and metabolic related biomarkers pre-allogenic hematopoietic stem cell transplant in acute myeloid leukemia
2022 · Sharareh Siamakpour-Reihani, Felicia Cao, et al. · PLoS ONE · 3
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Scalable power analysis and effect size exploration of microbiome community differences with Evident
2022 · Gibraan Rahman, Daniel McDonald, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 8
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An approach for evaluating the effects of dietary fiber polysaccharides on the human gut microbiome and plasma proteome
2022 · Omar Delannoy-Bruno, Chandani Desai, et al. · Proceedings of the National Academy of Sciences · 33
A Multidimensional Bioinformatic Platform for the Study of Human Response to Surgery
2022 · Austin M. Eckhoff, Ashton A. Connor, et al. · Annals of Surgery · 3
Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans
2021 · Omar Delannoy-Bruno, Chandani Desai, et al. · Nature · 142
Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo
2021 · Darryl A. Wesener, Zachary W. Beller, et al. · eLife · 12
Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles
2021 · Michael L. Patnode, Janaki L. Guruge, et al. · Cell Host & Microbe · 50
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SHOGUN: a modular, accurate and scalable framework for microbiome quantification
2020 · Benjamin Hillmann, Gabriel A Al-Ghalith, et al. · Bioinformatics · 59
Applying indirect open-circuit calorimetry to study energy expenditure in gnotobiotic mice harboring different human gut microbial communities
2019 · Ilia G. Halatchev, David O’Donnell, et al. · Microbiome · 7
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Bioremediation of a Common Product of Food Processing by a Human Gut Bacterium
2019 · Ashley R. Wolf, Darryl A. Wesener, et al. · Cell Host & Microbe · 60
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Interspecies Competition Impacts Targeted Manipulation of Human Gut Bacteria by Fiber-Derived Glycans
2019 · Michael L. Patnode, Zachary W. Beller, et al. · Cell · 327
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redbiom: a Rapid Sample Discovery and Feature Characterization System
2019 · Daniel McDonald, Benjamin Kaehler, et al. · mSystems · 49
Evaluating the Information Content of Shallow Shotgun Metagenomics
2018 · Benjamin Hillmann, Gabriel A. Al-Ghalith, et al. · mSystems · 469
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Striped UniFrac: enabling microbiome analysis at unprecedented scale
2018 · Daniel McDonald, Yoshiki Vázquez-Baeza, et al. · Nature Methods · 111
A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities
2018 · Andrew E. Schriefer, Paul F. Cliften, et al. · Journal of Microbiological Methods · 77
Qiita: rapid, web-enabled microbiome meta-analysis
2018 · Antonio Gonzalez, Jose A. Navas-Molina, et al. · Nature Methods · 625
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Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
2018 · Stefan Janssen, Daniel McDonald, et al. · mSystems · 536
Physiological mechanisms of sustained fumagillin-induced weight loss
2018 · Jie An, Liping Wang, et al. · JCI Insight · 13
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Effect of Progressive Weight Loss on Lactate Metabolism: A Randomized Controlled Trial
2018 · Maria Chondronikola, Faidon Magkos, et al. · Obesity · 31
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Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes
2017 · Lingjing Jiang, Amnon Amir, et al. · mSystems · 95
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Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice
2017 · Jessica L. Mark Welch, Yuko Hasegawa, et al. · Proceedings of the National Academy of Sciences · 235
Recommendations for Improving Identification and Quantification in Non-Targeted, GC-MS-Based Metabolomic Profiling of Human Plasma
2017 · Hanghang Wang, Michael Muehlbauer, et al. · Metabolites · 16
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The Gut Microbiota, Food Science, and Human Nutrition: A Timely Marriage
2017 · Michael J. Barratt, Carlito Lebrilla, et al. · Cell Host & Microbe · 114
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