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31671384

Funded outputs count: 25
Funder award ID: 31671384
OpenAlex ID: G8748254698
Exact Power Spectrum in a Minimal Hybrid Model of Stochastic Gene Expression Oscillations
2024 · Chen Jia, Hong Qian, et al. · SIAM Journal on Applied Mathematics · 12
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MyoD is a 3D genome structure organizer for muscle cell identity
2022 · Ruiting Wang, Fengling Chen, et al. · Nature Communications · 126
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3D genome alterations associated with dysregulated HOXA13 expression in high-risk T-lineage acute lymphoblastic leukemia
2021 · Lu Yang, Fengling Chen, et al. · Nature Communications · 54
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Quantifying phase separation property of chromatin associated proteins under physiological conditions using anti-1,6-hexanediol index
2020 · Minglei Shi, Kaiqiang You, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 8
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MyoD is a structure organizer of 3D genome architecture in muscle cells
2020 · Qian Chen, Fengling Chen, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemia
2020 · Lu Yang, Fengling Chen, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
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A large-scale CRISPR screen and identification of essential genes in cellular senescence bypass
2019 · Xuehui Liu, Lei Wei, et al. · Aging · 18
Integrating Hi-C and FISH data for modeling of the 3D organization of chromosomes
2019 · Ahmed Abbas, Xuan He, et al. · Nature Communications · 68
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SuperCT: a supervised-learning framework for enhanced characterization of single-cell transcriptomic profiles
2019 · Peng Xie, Mingxuan Gao, et al. · Nucleic Acids Research · 74
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Regulation by competition: a hidden layer of gene regulatory network
2019 · Lei Wei, Ye Yuan, et al. · Quantitative Biology · 25
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HiCDB: a sensitive and robust method for detecting contact domain boundaries
2018 · Fengling Chen, Guipeng Li, et al. · Nucleic Acids Research · 50
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Regulatory RNA binding proteins contribute to the transcriptome-wide splicing alterations in human cellular senescence
2018 · Qiongye Dong, Lei Wei, et al. · Aging · 32
CAPTURE: In Situ Analysis of Chromatin Composition of Endogenous Genomic Loci by Biotinylated dCas9
2018 · Xin Liu, Yuannyu Zhang, et al. · Current Protocols in Molecular Biology · 21
Synergistic co-regulation and competition by a SOX9-GLI-FOXA phasic transcriptional network coordinate chondrocyte differentiation transitions
2018 · Zhijia Tan, Ben Niu, et al. · PLoS Genetics · 60
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Co-inhibitory Molecule B7 Superfamily Member 1 Expressed by Tumor-Infiltrating Myeloid Cells Induces Dysfunction of Anti-tumor CD8+ T Cells
2018 · Jing Li, Younghee Lee, et al. · Immunity · 210
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Developing novel methods to image and visualize 3D genomes
2018 · Tszshan Ma, Long Chen, et al. · Cell Biology and Toxicology · 32
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FIND: difFerential chromatin INteractions Detection using a spatial Poisson process
2018 · Mohamed Nadhir Djekidel, Yang Chen, et al. · Genome Research · 62
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Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation
2018 · Yanjian Li, Yi He, et al. · Cell Death and Disease · 39
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Quantitative understanding of molecular competition as a hidden layer of gene regulatory network
2018 · Ye Yuan, Lei Wei, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 2
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Stochastic fluctuations can reveal the feedback signs of gene regulatory networks at the single-molecule level
2017 · Chen Jia, Peng Xie, et al. · Scientific Reports · 36
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BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions
2017 · Zhengyu Liang, Guipeng Li, et al. · Nature Communications · 92
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Emergent Lévy behavior in single-cell stochastic gene expression
2017 · Chen Jia, Michael Q. Zhang, et al. · Physical review. E · 42
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In Situ Capture of Chromatin Interactions by Biotinylated dCas9
2017 · Xin Liu, Yuannyu Zhang, et al. · Cell · 315
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Super-resolution imaging of a 2.5 kb non-repetitive DNA in situ in the nuclear genome using molecular beacon probes
2017 · Yanxiang Ni, Bo Cao, et al. · eLife · 34
Recurrently deregulated lncRNAs in hepatocellular carcinoma
2017 · Yang Yang, Lei Chen, et al. · Nature Communications · 337
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