Award

Comprehensive, flexible and FAIR Tools for the HuBMAP HIVE

Description: The Human BioMolecular Atlas Program (HuBMAP) will redefine our understanding of the human body by recovering multi-scale tissue organization -- anatomical, histological, and molecular, at unprecedented resolution. We propose to develop efficient, scalable, and easy to use computational tools to enable the use of HuBMAP collected data by consortium participants, the international research community and the large software and method development community.
Funding type: grant
Funder scheme: OT2
Start date: 2018-09-21
End date: 2022-09-20
Investigator: BENEDICT PATEN
Institution: CARNEGIE-MELLON UNIVERSITY
Funded outputs count: 72
Funder award ID: OT2OD026682
OpenAlex ID: G842382223
2026 · Jordan Eizenga, Mira Mastoras, et al. · bioRxiv (Cold Spring Harbor Laboratory)
2026 · Prajna Hebbar, Tamara Potapova, et al. · Cell · 2
2026 · Julian K. Lucas, Prajna Hebbar, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 10
2026 · Pille Hallast, Arang Rhie, et al. · bioRxiv (Cold Spring Harbor Laboratory)
2026 · Mobin Asri, Jordan M. Eizenga, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4
2026 · Katy Börner, Philip D. Blood, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 4
2026 · Ted Zhang, Haoran Chen, et al. · Bioinformatics Advances · 1
2025 · Haoran Chen, Yangyuan Zhang, et al. · PLoS Computational Biology
2025 · Mira Mastoras, Mobin Asri, et al. · Genome Research · 16
2025 · Katy Börner, Philip D. Blood, et al. · Nature Methods · 51
2025 · Hao Chen, Nam D. Nguyen, et al. · Genome Research · 1
2025 · Singh A, Vanaudenaerde B.M, et al. · Carolina Digital Repository (University of North Carolina at Chapel Hill)
2024 · Qi Song, Alex Singh, et al. · PLoS Computational Biology · 4
2024 · Nam D. Nguyen, Lorena Rosas, et al. · Genome biology · 13
2024 · Hao Chen, Young Je Lee, et al. · Cell Reports Methods · 7
2024 · Huangqingbo Sun, Jiayi Li, et al. · Bioinformatics · 6
2023 · Hao Chen, Young Je Lee, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
2023 · Joshua Hislop, Qi Song, et al. · Nature · 96
2023 · Hao Chen, Dongshunyi Li, et al. · Nature Methods · 105
2023 · Monica T Dayao, Alexandro Trevino, et al. · Bioinformatics · 14
2023 · Santiago Marco-Sola, Jordan M Eizenga, et al. · Bioinformatics · 67
2023 · Huangqingbo Sun, Jiayi Li, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
2023 · Qi Song, Matthew Ruffalo, et al. · Nucleic Acids Research · 16
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