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scalable minds GmbH (Germany)

Alternate names: scalable minds, scalable minds GmbH
ROR: 05ry58f81
OpenAlex ID: I4405268091
webKnossos: efficient online 3D data annotation for connectomics
2017 · Kevin M Boergens, Manuel Berning, et al. · Nature Methods · 188
OME-Zarr: a cloud-optimized bioimaging file format with international community support
2023 · Josh Moore, Daniela Basurto-Lozada, et al. · Histochemistry and Cell Biology · 167
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Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron microtomography and volume electron microscopy
2022 · Carles Bosch, Tobias Ackels, et al. · Nature Communications · 52
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MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis
2025 · Teresa Zulueta-Coarasa, Florian Jug, et al. · Nature Methods · 16
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Deep learning-based automated lesion segmentation on mouse stroke magnetic resonance images
2023 · Jeehye An, Leo Wendt, et al. · Scientific Reports · 15
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Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos
2025 · Yi Jiang, Haoyu Wang, et al. · Cell Reports Methods · 7
Structure-Function Mapping of Olfactory Bulb Circuits with Synchrotron X-ray Nanotomography
2025 · Yuxin Zhang, Carles Bosch, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 5
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Toward scalable reuse of vEM data: OME-Zarr to the rescue
2023 · Norman Rzepka, John A Bogovic, et al. · Methods in cell biology · 5
Cell nuclei segmentation in mm-scale x-ray holographic nanotomography images of mouse brain tissue
2024 · Andrea Nathansen, Matthis Clausen, et al. · Developments in X-Ray Tomography · 3
iSBEM: An Open-Source Workflow for Automated ROI Targeting in Volume Electron Microscopy
2026 · Paolo Ronchi, Graham Ross, et al. · bioRxiv (Cold Spring Harbor Laboratory) · 1
OME-Zarr RFC-9 Sample dataset
2026 · Windhager, Jonas, Rzepka, Norman, et al. · Zenodo (CERN European Organization for Nuclear Research)
[OME2026] OME-Zarr with Sharding, Collections and Zips
2026 · Rzepka, Norman · Zenodo (CERN European Organization for Nuclear Research)
The HEFTIE project
2026 · Stansby, David, Gollifer, Ruaridh, et al. · Zenodo (CERN European Organization for Nuclear Research)
Open data repository, An et al., Deep learning-based automated lesion segmentation on mouse stroke magnetic resonance images
2022 · An, Jeehye, Wendt, Leo, et al. · Zenodo (CERN European Organization for Nuclear Research)
Works count: 18
Citation count: 2,411
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