Performance Engineering for a Medical Imaging Application on the Intel Xeon Phi Accelerator
Year: 2013
Type: preprint
Abstract: We examine the Xeon Phi, which is based on Intel's Many Integrated Cores architecture, for its suitability to run the FDK algorithm--the most commonly used algorithm to perform the 3D image reconstruction in cone-beam computed tomography. We study the challenges of efficiently parallelizing the application and means to enable sensible data sharing between threads despite the lack of a shared last level cache. Apart from parallelization, SIMD vectorization is critical for good performance on the Xeon Phi; we perform various micro-benchmarks to investigate the platform's new set of vector instructions and put a special emphasis on the newly introduced vector gather capability. We refine a previous performance model for the application and adapt it for the Xeon Phi to validate the performance of our optimized hand-written assembly implementation, as well as the performance of several different auto-vectorization approaches.
Source: arXiv (Cornell University)
Authors: Hofmann, Johannes, Treibig, Jan, Hager, Georg, Wellein, Gerhard
Institution: Friedrich-Alexander-Universität Erlangen-Nürnberg
Language: English
Subfield: Hardware and Architecture
Field: Computer Science
Domain: Physical Sciences
Open Access status: green
OpenAlex ID: W1766386015