Advances in Proteome Analysis by Mass Spectrometry
Year: 2001
Type: article
Abstract: two-dimensional electrophoresis reverse-phase microcapillary liquid chromatography mass spectrometry tandem mass spectrometry electrospray ionization matrix-assisted laser desorption/ionization time-of-flight collision-induced dissociation isotope-coded affinity tag strong cation exchange high performance liquid chromatography The interpretation of the information contained in the genomic sequence of a species with respect to the structure, function, and control of biological processes is a technical and conceptual challenge for current research methods. Systematic and quantitative analysis of gene expression is emerging as a valuable tool to diagnostically distinguish between cell types (1Golub T.R. Slonim D.K. Tamayo P. Huard C. Gaasenbeek M. Mesirov J.P. Coller H. Loh M.L. Downing J.R. Caligiuri M.A. Bloomfield C.D. Lander E.S. Science. 1999; 286: 531-537Crossref PubMed Scopus (9190) Google Scholar, 2Alizadeh A.A. Eisen M.B. Davis R.E. Ma C. Lossos I.S. Rosenwald A. 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Measuring gene expression at the protein level is potentially more informative than the corresponding measurement at the mRNA level. Proteins, the major catalysts of biological function, contain several dimensions of information that collectively indicate the actual rather than the potential functional state as indicated by mRNA analysis. These include the abundance, state of modification, subcellular location, and three-dimensional structure of proteins and their association with each other and/or with biomolecules of different types. Mass spectrometry has become the analytical technology of choice for many of the aspects of proteome analyses that are reflected by the covalent structure of proteins. This review describes recent, innovative advances in mass spectrometry-based proteome analysis that collectively have converged into a generic new approach to proteomics. The specific advances include high throughput protein identification by multidimensional chromatography, automated tandem mass spectrometry and sequence data base searching, accurate quantification by the application of stable isotope dilution theory to protein analysis, and the targeted isolation of selected analytes by the use of highly selective chemistries. Selected applications of these methods along with speculations about future prospects and directions of proteomics research are also included. The development of methods to separate complex protein mixtures at high resolution by two-dimensional gel electrophoresis (2DE)1 into reproducible patterns (11O'Farrell P.H. J. Biol. Chem. 1975; 250: 4007-4021Abstract Full Text PDF PubMed Google Scholar, 12Klose J. 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Source: Journal of Biological Chemistry
Authors: Timothy J. Griffin, Ruedi Aebersold
Institution: Institute for Systems Biology
Language: English
Subfield: Spectroscopy
Field: Chemistry
Domain: Physical Sciences
Open Access status: hybrid
Estimated APC paid: $3,430
OpenAlex ID: W1990142733
