Work

Automated and accurate deposition of structures solved by X-ray diffraction to the Protein Data Bank

Year: 2004

Type: article

Abstract: The RCSB Protein Data Bank (PDB) has a number of options for deposition of structural data and has developed software tools to facilitate the process. In addition to ADIT and the PDB Validation Suite, a new software application, pdb_extract, has been designed to promote automatic data deposition of structures solved by X-ray diffraction. The pdb_extract software can extract information about data reduction, phasing, molecular replacement, density modification and refinement from the output files produced by many X-ray crystallographic applications. The options, procedures and tools for accurate and automated PDB data deposition are described here.

Source: Acta Crystallographica Section D Biological Crystallography

DOI: 10.1107/s0907444904019419

Authors: Huanwang Yang, Vladimir Guranovic, Shuchismita Dutta, Zukang Feng, Helen M. Berman, John D. Westbrook

Institutions: Rutgers, The State University of New Jersey, Worldwide Protein Data Bank

Language: English

Topic: Enzyme Structure and Function

Subfield: Structural Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: hybrid

Estimated APC paid: $4,740

OpenAlex ID: W2012531419