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ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

Year: 2010

Type: article

Abstract: Chromatin interaction analysis with paired-end tag sequencing (ChIA-PET) is a new technology to study genome-wide long-range chromatin interactions bound by protein factors. Here we present ChIA-PET Tool, a software package for automatic processing of ChIA-PET sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser. ChIA-PET Tool is fast, accurate, comprehensive, user-friendly, and open source (available at http://chiapet.gis.a-star.edu.sg).

Source: Genome biology

DOI: 10.1186/gb-2010-11-2-r22

Authors: Guoliang Li, Melissa J Fullwood, Han Xu, Fabianus Hendriyan Mulawadi, Stoyan Velkov, Vinsensius Vega, Pramila Nuwantha Ariyaratne, Yusoff Bin Mohamed, Hong-Sain Ooi, Chandana Tennakoon, Chia-Lin Wei, Yijun Ruan, Wing-Kin Sung

Institutions: Genome Institute of Singapore, National University of Singapore

Language: English

Topic: Genomics and Chromatin Dynamics

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: gold

Estimated APC paid: $5,490

Funders: Genome Institute of Singapore, National Institutes of Health, National Human Genome Research Institute

Awards: Whole Genome Chromatin Interaction Analysis using Pair-End-diTagging (CIA-PET), Ditag technologies for complete transcriptome annotation, Comprehensive Characterization and Classification of the Human Transcriptome

OpenAlex ID: W2031057223

FWCI: 7.029

Cites: 19

Cited by: 317

Related to: 10