Work

BridgeDb app: unifying identifier mapping services for Cytoscape

Year: 2014

Type: article

Abstract: The BridgeDb app for Cytoscape allows users to map and annotate identifiers of genes, proteins and metabolites in the context of biological networks. The app greatly simplifies the identifier mapping process in Cytoscape by providing a unified interface to different mapping resources and services. The app also provides a programming interface via Cytoscape Commands that can be utilized for identifier mapping by other Cytoscape apps. In this article we provide a technical guide to the BridgeDb app for mapping identifiers in Cytoscape.

Source: F1000Research

DOI: 10.12688/f1000research.4521.1

Authors: Jianjiong Gao, Chao Zhang, Martijn van Iersel, Li Zhang, Dong Xu, Nikolaus Schultz, Alexander R. Pico

Institutions: Memorial Sloan Kettering Cancer Center, Weill Cornell Medicine, Changchun University of Technology, University of Missouri, Gladstone Institutes

Language: English

Topic: Bioinformatics and Genomic Networks

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: gold

Estimated APC paid: $1,350

Funders: Robertson Foundation, National Institutes of Health, National Institute of General Medical Sciences

Awards: G3316149902, National Resource for Network Biology (NRNB), The WikiPathways Project: At the Intersection of Big Data and Researcher Knowledge, G7206094169

OpenAlex ID: W2037565172

FWCI: 0.73

Cites: 12

Cited by: 10

Related to: 10