Year: 2015
Type: article
Abstract: UNLABELLED: xiNET is a visualization tool for exploring cross-linking/mass spectrometry results. The interactive maps of the cross-link network that it generates are a type of node-link diagram. In these maps xiNET displays: (1) residue resolution positional information including linkage sites and linked peptides; (2) all types of cross-linking reaction product; (3) ambiguous results; and, (4) additional sequence information such as domains. xiNET runs in a browser and exports vector graphics which can be edited in common drawing packages to create publication quality figures. AVAILABILITY: xiNET is open source, released under the Apache version 2 license. Results can be viewed by uploading data to http://crosslinkviewer.org/ or by downloading the software from http://github.com/colin-combe/crosslink-viewer and running it locally.
Source: Molecular & Cellular Proteomics
Authors: Colin W. Combe, Lutz Fischer, Juri Rappsilber
Language: English
Subfield: Spectroscopy
Field: Chemistry
Domain: Physical Sciences
Open Access status: hybrid
Estimated APC paid: $1,943
Funder: Wellcome Trust
Awards: Protein structures in the context of time and space by mass spectrometry., Proteomics at the Wellcome Trust Centre for Cell Biology., Protein structures in the context of time and space by mass spectrometry., Three-dimensional proteomics: Mapping the geometry of large protein assemblies using cross-linking, mass spectrometry, and bioinformatics., Core funding renewal for the Wellcome Trust Centre for Cell Biology .
OpenAlex ID: W2053706533