Year: 2001
Type: article
Abstract: Following Poland and Scheraga, we consider a simplified model for the denaturation transition of DNA. The two strands are modeled as interacting polymer chains. The attractive interactions, which mimic the pairing between the four bases, are reduced to a single short-range binding term. Furthermore, base-pair misalignments are forbidden, implying that this binding term exists only for corresponding (same curvilinear abscissae) monomers of the two chains. We take into account the excluded-volume repulsion between monomers of the two chains, but neglect intrachain repulsion. We find that the excluded-volume term generates an effective repulsive interaction between the chains, which decays as 1/ r d − 2 . Due to this long-range repulsion between the chains, the denaturation transition is first order in any dimension, in agreement with previous studies.
Source: Europhysics Letters (EPL)
Authors: T Garel, C Monthus, H Orland
Language: English
Subfield: Condensed Matter Physics
Field: Physics and Astronomy
Domain: Physical Sciences
Open Access status: bronze
OpenAlex ID: W2054270756