Work

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

Year: 2015

Type: article

Abstract: UNLABELLED: We announce the release of kSNP3.0, a program for SNP identification and phylogenetic analysis without genome alignment or the requirement for reference genomes. kSNP3.0 is a significantly improved version of kSNP v2. AVAILABILITY AND IMPLEMENTATION: kSNP3.0 is implemented as a package of stand-alone executables for Linux and Mac OS X under the open-source BSD license. The executable packages, source code and a full User Guide are freely available at https://sourceforge.net/projects/ksnp/files/ CONTACT: [email protected].

Source: Bioinformatics

DOI: 10.1093/bioinformatics/btv271

Authors: Shea N Gardner, Tom Slezak, Barry G. Hall

Institution: Lawrence Livermore National Laboratory

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: bronze

Funders: U.S. Department of Energy, Lawrence Livermore National Laboratory

Awards: G1356433355, G14554683, G2145270357, G991281326