Work

A DFT Model Study of the Carbocations Formed via the Fjord‐ and Bay‐Region Diol Epoxide Metabolites of Isomeric Dibenzopyrenes and Naphthopyrene

Year: 2009

Type: article

Abstract: A density‐functional theory (DFT) study aimed at understanding structure–reactivity relationships in the oxidized metabolites of isomeric dibenzopyrenes (DBPs) and naphthopyrene (NP) is reported. These large polycyclic aromatic hydrocarbons (PAHs) contain a pyrene moiety and two benzannelated rings or a naphtho ring, and depending on the annelation mode, possess a fjord region (DB[a,l]P and N[1,2‐a]P) or two or three bay‐regions (DB[a,h]P, DB[a,i]P, and DB[a,e]P). Relative energies of the resulting carbocations were examined and compared, taking into account the available biological activity data on these compounds. Geometrical, electronic and conformational issues were considered. Charge‐delocalization modes in the resulting carbocations were deduced by the changes in charges derived from natural population analysis (NPA). The reported biological activity of these toxic PAHs was found to correlate with the degree of deviation from planarity of the aromatic system, in accord with the higher bioactivity of the fjord‐ and methylated bay‐region compounds. On the other hand, relative formation of the possible carbocations derived from each PAH, as well as the activity order for compounds presenting similar distortions, were explained by their relative carbocation stabilities. The covalent adducts formed via the fjord‐region diol epoxide of DB[a,l]P and the exocyclic amino group and the N‐7 of guanine were computed, and relative energies and geometries of the resulting adducts were examined. Furthermore, PAH‐purine base adduct formation was modeled inside a DNA fragment by means of the ONIOM method. (© Wiley‐VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2009)

Source: European Journal of Organic Chemistry

DOI: 10.1002/ejoc.200900264

Authors: Gabriela L. Borosky, Kenneth K. Laali

Institutions: Universidad Nacional de Córdoba, Kent State University

Language: English

Topic: Carcinogens and Genotoxicity Assessment

Subfield: Cancer Research

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: bronze

Funders: Universidad Nacional de Córdoba, Consejo Nacional de Investigaciones Científicas y Técnicas, National Institutes of Health, National Cancer Institute

Award: Reactive Intermediates of Carcinogenesis of PAHs