Work

DNAPlotter: circular and linear interactive genome visualization

Year: 2008

Type: article

Abstract: UNLABELLED: DNAPlotter is an interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files (EMBL, GenBank, GFF) as well as data from relational databases, it filters features of interest to display on separate user-definable tracks. It can be used to produce publication quality images for papers or web pages. AVAILABILITY: DNAPlotter is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute web sites: http://www.sanger.ac.uk/Software/Artemis/circular/

Source: Bioinformatics

DOI: 10.1093/bioinformatics/btn578

Authors: Tim Carver, Nick Thomson, Alan Bleasby, Matthew Berriman, Julian Parkhill

Institutions: European Bioinformatics Institute, Wellcome Sanger Institute

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: hybrid

Estimated APC paid: $3,989

Funder: Wellcome Trust