Work

MSMExplorer: visualizing Markov state models for biomolecule folding simulations

Year: 2013

Type: article

Abstract: SUMMARY: Markov state models (MSMs) for the study of biomolecule folding simulations have emerged as a powerful tool for computational study of folding dynamics. MSMExplorer is a visualization application purpose-built to visualize these MSMs with an aim to increase the efficacy and reach of MSM science. AVAILABILITY: MSMExplorer is available for download from https://simtk.org/home/msmexplorer. The source code is made available under the GNU Lesser General Public License at https://github.com/SimTk/msmexplorer.

Source: Bioinformatics

DOI: 10.1093/bioinformatics/btt051

Authors: Bryce Cronkite-Ratcliff, Vijay Pande

Institution: Stanford University

Language: English

Topic: Protein Structure and Dynamics

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: bronze

OpenAlex ID: W2140796042

FWCI: 1.1

Cites: 12

Cited by: 26

Related to: 10