High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
Year: 2015
Type: article
Abstract: Pontibacter roseus is a member of genus Pontibacter family Cytophagaceae, class Cytophagia. While the type species of the genus Pontibacter actiniarum was isolated in 2005 from a marine environment, subsequent species of the same genus have been found in different types of habitats ranging from seawater, sediment, desert soil, rhizosphere, contaminated sites, solar saltern and muddy water. Here we describe the features of Pontibacter roseus strain SRC-1(T) along with its complete genome sequence and annotation from a culture of DSM 17521(T). The 4,581,480 bp long draft genome consists of 12 scaffolds with 4,003 protein-coding and 50 RNA genes and is a part of Genomic Encyclopedia of Type Strains: KMG-I project.
Source: Standards in Genomic Sciences
Authors: Supratim Mukherjee, Alla Lapidus, Nicole Shapiro, Jan-Fang Cheng, James Han, TBK Reddy, Marcel Huntemann, Natalia Ivanova, Natalia Mikhailova, Amy Chen, Krishna Palaniappan, Stefan Spring, Markus Göker, Victor Markowitz, Tanja Woyke, Brian J Tindall, Hans-Peter Klenk, Nikos C Kyrpides, Amrita Pati
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: gold
Estimated APC paid: $2,145
OpenAlex ID: W2149237343