Work

IMG/M: the integrated metagenome data management and comparative analysis system

Year: 2011

Type: article

Abstract: The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M's data content and analytical capabilities have been extended through regular updates since its first release in 2007. IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer).

Source: Nucleic Acids Research

DOI: 10.1093/nar/gkr975

Authors: V. M. Markowitz, I.-M. A. Chen, K. Chu, E. Szeto, K. Palaniappan, Y. Grechkin, A. Ratner, B. Jacob, A. Pati, M. Huntemann, K. Liolios, I. Pagani, I. Anderson, K. Mavromatis, N. N. Ivanova, N. C. Kyrpides

Institutions: Lawrence Berkeley National Laboratory, Joint Genome Institute

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: gold

Estimated APC paid: $3,992

Funders: U.S. Department of Energy, National Institutes of Health, Office of Science, National Human Genome Research Institute, Biological and Environmental Research, Lawrence Berkeley National Laboratory

Awards: G1079818582, G1143651532, G1286236842, G1337544421, G223002938, A Quality Assurance, Coordination and Analysis Center for HMP, G3083819904, G419881185, G42916606, G4501827968, G498139845, G6652958823, G7354628648, G7787287669, G969889393

OpenAlex ID: W2170089054

FWCI: 11.27

Cites: 30

Cited by: 263

Related to: 10