Work

phraSED-ML: A paraphrased, human-readable adaptation of SED-ML

Year: 2016

Type: article

Abstract: MOTIVATION: Model simulation exchange has been standardized with the Simulation Experiment Description Markup Language (SED-ML), but specialized software is needed to generate simulations in this format. Text-based languages allow researchers to create and modify experimental protocols quickly and easily, and export them to a common machine-readable format. RESULTS: phraSED-ML language allows modelers to use simple text commands to encode various elements of SED-ML (models, tasks, simulations, and results) in a format easy to read and modify. The library can translate this script to SED-ML for use in other softwares. AVAILABILITY: phraSED-ML language specification, libphrasedml library, and source code are available under BSD license from http://phrasedml.sourceforge.net/ .

Source: Journal of Bioinformatics and Computational Biology

DOI: 10.1142/s0219720016500359

Authors: Kiri Choi, Lucian P. Smith, J. Kyle Medley, Herbert M. Sauro

Institution: University of Washington

Language: English

Topic: Scientific Computing and Data Management

Subfield: Information Systems and Management

Field: Decision Sciences

Domain: Social Sciences

Open Access status: green

Funders: National Heart, Lung, and Blood Institute, National Institute of General Medical Sciences

Awards: G642825970, G798009823