Reproducible Research in the Cloud with the Refinery Platform
Year: 2016
Type: other
Abstract: The Refinery Platform ( http://refinery-platform.org ) is a data analysis environment for reproducible research that links a data repository with analysis pipelines and visualization tools within a single user interface. The goal of Refinery is to facilitate analysis and interpretation of genomic and epigenomic data in a reproducible fashion. To support this, the data repository is built around the ISA-Tab data model ( http://isa-tools.org ) and analyses are executed in Galaxy ( http://usegalaxy.org ). Workflows are configured, launched, and monitored through the Refinery user interface, which offers a sophisticated file browser that operates on data set sample annotations. Among other efforts, we have created the Stem Cell Commons based on the Refinery Platform for the Harvard Stem Cell Institute with over 200 stem cell related data sets.
Authors: Nils Gehlenborg, Shannan Ho Sui, Ilya Sytchev, Stefan Luger, Fritz Lekschas, Richard W Park, Jennifer Marx, Scott Ouellette, David R Jones, Anton Xue, Psalm Haseley, Marc Streit, Winston Hide, Peter J Park
Institution: Harvard University
Language: English
Subfield: Information Systems and Management
Field: Decision Sciences
Domain: Social Sciences
Open Access status: gold
OpenAlex ID: W2627011432