Work

Evaluation of models in the 2016 cryo-EM model challenge

Year: 2018

Type: article

Abstract: An evaluation system and a web infrastructure were developed for the second ( The evaluation system includes tools to validate stereo-chemical plausibility of submitted models, check their fit to the corresponding density maps, estimate their overall and per-residue accuracy, and assess their similarity to reference cryo-EM or X-ray structures as well as other models submitted in this challenge. The web infrastructure provides a convenient interface for analyzing models at different levels of detail. It includes interactively sortable tables of evaluation scores for different subsets of models and different sublevels of structure organization, and a suite of visualization tools facilitating comparative model analysis. The results are publicly accessible at http://model-compare.emdatabank.org.

Source: Acta Crystallographica Section A Foundations and Advances

DOI: 10.1107/s0108767318098768

Authors: Andriy Kryshtafovych, Catherine L. Lawson, Wah Chiu

Institutions: University of California, Davis, Rutgers, The State University of New Jersey, Stanford University

Language: English

Topic: Advanced Electron Microscopy Techniques and Applications

Subfield: Structural Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: bronze

OpenAlex ID: W2913356304

FWCI:

Cites:

Cited by: 1

Related to: 10