Year: 2019
Type: article
Abstract: Syntrophy allows a microbial community as a whole to survive in an environment, even though individual microbes cannot. The metabolic interdependence typical of syntrophy is thought to arise from the accumulation of degenerative mutations during the sustained co-evolution of initially self-sufficient organisms. An alternative and underexplored possibility is that syntrophy can emerge spontaneously in communities of organisms that did not co-evolve. Here, we study this de novo origin of syntrophy using experimentally validated computational techniques to predict an organism's viability from its metabolic reactions. We show that pairs of metabolisms that are randomly sampled from a large space of possible metabolism and viable on specific primary carbon sources often become viable on new carbon sources by exchanging metabolites. The same biochemical reactions that are required for viability on primary carbon sources also confer viability on novel carbon sources. Our observations highlight a new and important avenue for the emergence of metabolic adaptations and novel ecological interactions.
Source: PLoS Computational Biology
Authors: Eric Libby, Laurent Hébert-Dufresne, Sayed-Rzgar Hosseini, Andreas Wagner
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: gold
Estimated APC paid: $2,350
Funders: National Science Foundation, National Aeronautics and Space Administration, James S. McDonnell Foundation, Santa Fe Institute, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, Nuclear Safety and Security Commission, Universität Zürich, National Institute of General Medical Sciences
Awards: G1835917608, G3215241047, G4768352037, HOW DO WE CONTEND WITH THE TRULY ALIEN? MOST STRATEGIES FOR BIOSIGNATURE DETECTION RELY UPON FINDING FEATURES KNOWN TO BE ASSOCIATED WITH TERRESTRIAL LIFE SUCH AS PARTICULAR CLASSES OF MOLECULES BUT LIFE MAY BE VASTLY DIFFERENT ON OTHER WORLDS. THIS WORK WILL FURTHER DEVELOP SEVERAL TRULY AGNOSTIC APPROACHES NONE OF WHICH PRESUPPOSE A PARTICULAR MOLECULAR FRAMEWORK. SOME OF THESE AREAS WILL INVOLVE NEW LINES OF INQUIRY THAT CAN BE ACCOMPLISHED USING INSTRUMENTATION THAT IS EITHER HIGH HERITAGE OR ON A PATH TOWARD HIGH TRL. OTHERS WILL NECESSITATE THE DESIGN OF COMPLETELY NEW ANALYTICAL TECHNIQUES. OUR NAI WILL NOT ONLY ADVANCE EACH OF THESE AGNOSTIC DETECTION CONCEPTS SEPARATELY BUT ALSO JOIN THESE TRADITIONALLY FRAGMENTED EFFORTS IN A UNIFIED RESEARCH PROGRAM ONE THAT DRAWS LESSONS FROM OUR OPERATIONAL EXPERIENCES IN PLANETARY EXPLORATION THUS FAR. WE WILL BRING TOGETHER THEORETICIANS AND EXPERIMENTALISTS AS AN INCUBATOR FOR NEW AGNOSTIC LIFE DETECTION APPROACHES CREATE A COMMON TRAINING SET OF BIOTIC AND ABIOTIC TEST SUBSTRATES ESTABLISH LIKELIHOODS AND THRESHOLDS WITH PROBABILISTIC MODELS AND DEVELOP A BROADER FORMULATION OF THE LADDER OF LIFE. IN THE PROCESS WE WILL MERGE THE BROAD AND NARROW ENDS OF THE LIFE DETECTION SPECTRUM INTO A COLLECTIVE DIALOGUE ONE THAT WILL HELP US SYNTHESIZE PRIORITIZE EVALUATE AND STRENGTHEN THE SEARCH FOR LIFE ON FUTURE SPACE MISSIONS., Robustness and weakened selection in the adaptive evolution of fluorescent proteins, Translational Global Infectious Diseases Research Center
OpenAlex ID: W2963979266