Work

MEDAL

Year: 2019

Type: conference-paper

Abstract: Computational genomics has proven its great potential to support precise and customized health care. However, with the wide adoption of the Next Generation Sequencing (NGS) technology, 'DNA Alignment', as the crucial step in computational genomics, is becoming more and more challenging due to the booming bio-data. Consequently, various hardware approaches have been explored to accelerate DNA seeding - the core and most time consuming step in DNA alignment.

Source: Proceedings of the ... annual International Symposium on Microarchitecture/Proceedings of the annual International Symposium on Microarchitecture

DOI: 10.1145/3352460.3358329

Authors: Wenqin Huangfu, Xueqi Li, Shuangchen Li, Xing Hu, Peng Gu, Yuan Xie

Institutions: University of California, Santa Barbara, Chinese Academy of Sciences, Institute of Computing Technology, Alibaba Group (United States), Alibaba DAMO Academy (China), Alibaba Group (China)

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: bronze

Funders: National Science Foundation, Defense Advanced Research Projects Agency

Awards: II-New: RICARDO: Research Infrastructure for Circuit and Architecture Design with Emerging Technologies, SHF:SMALL: MECAR: Memory-Centric Architecture to Bridge the Gap Between Computing and Memory, XPS: FULL: DSD: Collaborative Research: Parallelizing and Accelerating Metagenomic Applications, SHF:SMALL:Collaborative Research: Exploring Nonvolatility of Emerging Memory Technologies for Architecture Design

OpenAlex ID: W2979823675

FWCI: 25.41

Cites: 41

Cited by: 65

Related to: 10