Work

Alignment of Biological Sequences with Jalview

Year: 2020

Type: book-chapter

Abstract: In this chapter, we introduce core functionality of the Jalview interactive platform for the creation, analysis, and publication of multiple sequence alignments. A workflow is described based on Jalview's core functions: from data import to figure generation, including import of alignment reliability scores from T-Coffee and use of Jalview from the command line. The accompanying notes provide background information on the underlying methods and discuss additional options for working with Jalview to perform multiple sequence alignment, functional site analysis, and publication of alignments on the web.

Source: Methods in molecular biology

Parent work: Multiple Sequence Alignment: Methods and Protocols

DOI: 10.1007/978-1-0716-1036-7_13

Authors: James B. Procter, G. Mungo Carstairs, Ben Soares, Kira Mourão, T. Charles Ofoegbu, Daniel Barton, Lauren Lui, Anne Menard, Natasha Sherstnev, David Roldan-Martinez, Suzanne Duce, David M. A. Martin, Geoffrey J. Barton

Institutions: University of Dundee, Capgemini (France), Chinese Academy of Sciences, Institute of Physics, University of California, Santa Cruz, Université Paris-Sud, Universitat Politècnica de València

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: hybrid

Funders: University of Dundee, Wellcome Trust, Scottish Funding Council, Directorate for Biological Sciences, Biotechnology and Biological Sciences Research Council

Awards: Extending The Jalview Resource for Biological Sequence Alignment and Analysis., G378013757, The Dundee Resource for Sequence Analysis and Structure Prediction, The Jalview Resource for Sequence Analysis and Annotation

OpenAlex ID: W3111109655

FWCI: 22.94

Cites: 20

Cited by: 221

Related to: 8