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High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory

Year: 2022

Type: preprint

Abstract: We show that the wavefront algorithm can achieve higher pairwise read alignment throughput on a UPMEM PIM system than on a server-grade multi-threaded CPU system.

Source: arXiv (Cornell University)

DOI: 10.48550/arxiv.2204.02085

Authors: Diab, Safaa, Nassereldine, Amir, Alser, Mohammed, Luna, Juan Gómez, Mutlu, Onur, Hajj, Izzat El

Institutions: American University of Beirut, ETH Zurich

Language: English

Topic: Parallel Computing and Optimization Techniques

Subfield: Hardware and Architecture

Field: Computer Science

Domain: Physical Sciences

Open Access status: green

OpenAlex ID: W4226301645

Cites:

Cited by: 2

Related to: 10