Transcripts per million ratio: applying distribution-aware normalisation over the popular TPM method
Year: 2022
Type: preprint
Abstract: Current popular methods in literature of RNA sequencing normalisation do not account for gene length when compared across samples, whilst adjusting for count biases in the data. This creates a gap in the normalisation as bigger genes in RNA sequencing accumulate more reads due to shotgun sequencing methods. As a result, the proportions of these reads inter-sample are not properly accounted for in current normalisation methods. Alternatively, methods which account for gene length do not account for the pan-sample biases in the data by accounting for a central read average. Thus, in order to fill in the gap in the literature, we propose a novel method of Transcripts Per Million Ratio and its relatives in RNA-sequencing differential expression normalisation that can be used in different conditions, which takes into account the gene length as well as relative expression in normalisation.
Source: arXiv (Cornell University)
Authors: In, Hilbert Lam Yuen, Pincket, Robbe
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4294433157