Work

Table S5 from Integrated Pan-Cancer Map of EBV-Associated Neoplasms Reveals Functional Host–Virus Interactions

Year: 2023

Type: other

Abstract: list of DEGs (fold change >1.5, FDR<0.05) between EBV+ and EBV- samples in each cancer (A-G). For each gene, shown are the mean expression value across EBV- and EBV+ cancer samples. The log-fold change, p-value and FDR values were obtained using differential expression analysis in edgeR. H, genes involved in Type I and Type II interferon activity (see methods). I, interferon activity of EBV+ tumor types. Shown in columns are cancer types, classification into IFN+ or IFN- groups for EBV+ samples or control group for EBV- samples, EBV status, Type I and Type II interferon signature score, and z-scores of genes related to Type I and Type II interferon signatures, for each sample (rows). J, expression values (transcripts per million; T.P.M.) of all genes (rows) in each sample (columns).

DOI: 10.1158/0008-5472.22422761

Authors: Srishti Chakravorty, Bingyu Yan, Chong Wang, Luopin Wang, Joseph Taylor Quaid, Chin Fang Lin, Scott D. Briggs, Joydeb Majumder, D. Alejandro Canaria, Daniel Chauss, Gaurav Chopra, Matthew R. Olson, Bo Zhao, Behdad Afzali, Majid Kazemian

Language: English

Topic: Viral-associated cancers and disorders

Subfield: Oncology

Field: Medicine

Domain: Health Sciences

SDG: Good health and well-being

Open Access status: gold

OpenAlex ID: W4362363140

Cites:

Cited by:

Related to: 10