Chromoscope: interactive multiscale visualization for structural variation in human genomes
Year: 2023
Type: article
Abstract: The demonstration cancer genome data was obtained from the publicly available ICGC/TCGA PCAWG Consortium 9 repository available at https://dcc.icgc.org/releases/ . Demonstration data are limited to somatic mutation calls, which are publicly available, as opposed to germline mutation calls or raw sequencing reads. Additional data from cell lines were obtained from the SRA archive (project SRP162370 ), which is public, allowing us to showcase Chromoscope’s display of raw sequencing reads.
Source: Nature Methods
Authors: Sehi L’Yi, Dominika Maziec, Victoria Stevens, Trevor Manz, Alexander Veit, Michele Berselli, Peter J. Park, Dominik Głodzik, Nils Gehlenborg
Institution: Harvard University
Language: English
Subfield: Genetics
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4388126361