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CODA (part 6): register the nuclear coordinates and construct 3D cell matrix | HuBMAP | JHU-TMC v1

Year: 2024

Type: preprint

Abstract: Using the registration transformations calculated in low-resolution (as described CODA (part 2): calculate registration on low-resolution tissue images), register the nuclear coordinates generated in CODA (part 5): nuclear coordinate generation

DOI: 10.17504/protocols.io.n2bvjnrnxgk5/v1

Authors: Kyu Sang Han, Pei-Hsun Wu, Joel Sunshine, Ashley Kiemen, Sashank Reddy, Denis Wirtz

Institutions: Johns Hopkins University, Johns Hopkins Medicine

Language: English

Topic: Cell Image Analysis Techniques

Subfield: Biophysics

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: gold

Funder: National Cancer Institute

Award: G601512365

OpenAlex ID: W4393371375

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