Intrachromosomal Hi-C Contact Lists And Matrices Of Lymphoma Cell Lines
Year: 2018
Type: dataset
Abstract: Hi-C datasets generated in Donaldson, Sungalee, Zufferey, Tavernari et al. are provided as intrachromosomal contact lists and matrices, divided by cell line/condition and chromosome. The following lymphoma cell lines/conditions are available: - Karpas-422 (KARPAS_DMSO and KARPAS_GSK treatment) - WSU-DLCL2 (WSU_DMSO and WSU_GSK treatment) - OCI-Ly19 (LY19WT_DMSO) - OCI-Ly19 expressing the mutated protein EZH2Y646F (LY19Y646F_DMSO) Contact lists are provided as compressed plain-text files in which each row represents a Hi-C contact. Column fields are described below: 1) strand of read 1 (0=forward, 16=reverse) 2) chromosome of read 1 3) position on the chromosome where read 1 aligned 4) strand of read 2 (0=forward, 16=reverse) 5) chromosome of read 2 6) position on the chromosome where read 2 aligned 7) mapping quality of read 1 8) name of the read pair as seen in the FASTQ files 9) mapping quality of read 2 Intrachromosomal Hi-C matrices are provided in .hic format for visualization with JuiceBox software.
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4393536779