Work

Data from: "Rapid molecular evolution of Spiroplasma symbionts of Drosophila"

Year: 2020

Type: dataset

Abstract: This repository contains data and information to reproduce the findings reported in the paper. File descriptions: OTU_sequences.fasta – all Spiroplasma sequences that contained an OTU domain as predicted by PfamScan OTU_alignments.fasta – alignment of OTU domains performed using Mafft RIP_sequences.fasta – all Spiroplasma sequences that contained an RIP domain as predicted by PfamScan RIP_alignments.fasta – alignment of RIP domains performed using the HMMER package Spiroplasma_supermatrix.fasta – Fasta alignment of concatenated single copy Spiroplasma loci conserved across the investigated strains. Loci that showed signs of recombination were not included Spiroplasma_partitions.txt – Lists the loci that make up the Spiroplasma supermatrix Spiroplasma_partitioning.scheme.txt – Partitioning scheme employed in our Maximum Likelihood analysis of the supermatrix. This was the best fitting partitioning scheme as determined with IQ-TREE Protocol_1.pdf – Chloroform–Ethanol protocol used for extracting Spiroplasma DNA for sHy-Tx

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.3903208

Authors: Gerth, Michael, Martinez Montoya, Humberto, Ramirez, Paulino, Masson, Florent, Griffin, Joanne S, Aramayo, Rodolfo, Siozios, Stefanos, Lemaitre, Bruno, Mateos, Mariana, Hurst, Gregory DD

Institutions: Oxford Brookes University, Texas A&M University, École Polytechnique Fédérale de Lausanne, University of Liverpool

Language: English

Topic: Insect symbiosis and bacterial influences

Subfield: Insect Science

Field: Agricultural and Biological Sciences

Domain: Life Sciences

Open Access status: green

Funder: European Commission

Award: Determing symbiont factors that affect compatibility with a novel host

OpenAlex ID: W4393606030

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