Work

Genome data from Effrenium voratum CCMP421, RCC1521, and rt-383

Year: 2023

Type: dataset

Abstract: This dataset represents secondary data generated from the genomic analysis of three isolates of Effrenium voratum (CCMP421, RCC1521, and rt-383), the early-diverging, free-living lineage of Symbiodiniaceae dinoflagellates. The dataset includes, for each taxon, (a) the de novo assembled genome sequences in FASTA format (*genome.fa.tgz), (b) structural annotation of the assembled genome in GFF3 format (*.genome.annotation.gff3.tgz), (c) the predicted protein-coding sequences of gene models in FASTA format (*genemodel.CDS.fa.tgz), (d) the predicted protein sequences of gene models in FASTA format (*genemodel.PROT.fa.tgz), and (c) the associated sequences and gene annotations of organellar genomic sequences (i.e. mitochondrial and plastid) (*organellar.tgz). Functional annotations of all gene models from the three genomes are available in the Excel spreadsheet (*GeneModels.xlsx). See README.txt for a more-detailed description of the files.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.8373421

Authors: Shah, Sarah, Dougan, Katherine E., Chen, Yibi, Lo, Rosalyn, Laird, Gemma, Fortuin, Michael D. A., Rai, Subash, Murigneux, Valentine, Bellantuono, Anthony J., Rodriguez-Lanetty, Mauricio, Bhattacharya, Debashish, Chan, Cheong Xin

Institutions: The University of Queensland, Florida International University, Rutgers, The State University of New Jersey

Language: English

Topic: Protist diversity and phylogeny

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

Funders: National Science Foundation, Australian Research Council

Awards: Genomics and evolution of symbiont transmission in coral reefs, CAREER: Exploring the Immunological Priming in Basal Metazoan (Anthozoan), NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration

OpenAlex ID: W4393521991

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