Work

Cell type matching across species using protein embeddings and transfer learning

Year: 2023

Type: dataset

Abstract: TACTiCS is a method to transfer and align cell types in cross-species data. This repository contains the protein sequences, protein embeddings, count matrices and trained models for human, mouse and marmoset.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.7582460

Authors: Biharie, Kirti, Michielsen, Lieke, Reinders, Marcel, Mahfouz, Ahmed

Institutions: Delft University of Technology, Leiden University Medical Center

Language: English

Topic: Single-cell and spatial transcriptomics

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W4393523581

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