Work

Historical Arabidopsis thaliana genomes from across its native range.

Year: 2022

Type: dataset

Abstract: We report short-read Illumina sequencing of 131 Arabidopsis thaliana herbarium specimens across its native range collected from 1820 to 2010. Sequencing depth averaged ~6X across these genomes. Sequences from the herbarium samples showed the expected degradation patterns typical of ancient DNA with endogenous DNA content between 18.01-88.26% (mean 56%; median 74%) and enrichment of cytosine to thymine substitutions at fragment ends. We provide access to the sequences upon request.

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.7187527

Authors: Lopez, Lua, Marciniak, Stephanie, Perry, George H, Lasky, Jesse R.

Institutions: California State University, San Bernardino, Pennsylvania State University

Language: English

Topic: Genomics and Phylogenetic Studies

Subfield: Molecular Biology

Field: Biochemistry, Genetics and Molecular Biology

Domain: Life Sciences

SDG: Zero hunger

Open Access status: green

OpenAlex ID: W4393586756

Cites:

Cited by: 2

Related to: 10