Work

Spatial metatranscriptomics resolves host-bacteria-fungi interactomes, Source Data

Year: 2023

Type: dataset

Abstract: Source Data for a publication: Spatial metatranscriptomics resolves host-bacteria-fungi interactomes. Includes the data sets to generate the results. Contains five different experiment types: - Pst bacterial infiltration experiment - Enrichment experiment with different array types - Comparison between SmT vs. Amp-seq - Outdoor-grown leaf experiments - Sterile leaf experiment For each of the experiments are included (if generated, see the README file): - Gene count matrices - Microbial taxa count matrices - Bright field images - Alignment files (Spot files) - Putative microbial reads and related probe information - Data for enrichment analysis - Fluorescent images and corresponding fluorescent values

Source: Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.8308136

Authors: Saarenpää, Sami, Shalev, Or, Ashkenazy, Haim, Carlos, Vanessa, Lundberg, Derek Severi, Weigel, Detlef, Giacomello, Stefania

Institutions: Science for Life Laboratory, KTH Royal Institute of Technology, Max Planck Institute for Biology

Language: English

Topic: Plant-Microbe Interactions and Immunity

Subfield: Plant Science

Field: Agricultural and Biological Sciences

Domain: Life Sciences

Open Access status: green

OpenAlex ID: W4394025881

Cites:

Cited by: 1

Related to: 10