Homologous membrane protein structures (HOMEP) version 1
Year: 2006
Type: dataset
Abstract: Table 1 = List of membrane protein structures in the HOMEP data set (version 1). From Forrest, Tang & Honig 2006 Biophysical Journal (Supplementary Table 1) https://www.ncbi.nlm.nih.gov/pubmed/16648166 Contains the following columns: PDB-Code Protein-Name Source Res-(Å) Length (Num-TM) Number-of-TM-domains Family Table 2 = List of pairs of membrane protein structures in the HOMEP data set (version 1). From Forrest, Tang & Honig 2006 Biophysical Journal (Supplementary Table 2) Contains the following columns: Model Family Query Template ID(%) RMS(Å) GDT_TS(%) TM-ID(%) TM-RMS(Å) TM GDT_TS(%) Table 3 = Manually-defined transmembrane regions in the HOMEP data set (version 1), listed for each family by transmembrane segment number. From Forrest, Tang & Honig 2006 Biophysical Journal (Supplementary Table 3). Contains the columns defined as follows: Protein chain identifier, start (-s) and end (-e) residues for each PDB structure in the family
Source: Figshare
Institutions: National Institutes of Health, Columbia University
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
Funder: National Science Foundation
OpenAlex ID: W4393821264