Additional file 7 of Extensive evaluation of ATAC-seq protocols for native or formaldehyde-fixed nuclei
Year: 2022
Type: dataset
Abstract: Additional file 7: Supplementary Table S7. Differential motif deviation analysis results generated using chromVAR in native samples. Files contain results for differential deviation score tests between clusters for all motifs. Column 1 is the human motif ID from JASPAR CORE database; Column 2 shows the cluster of interest for each differential test; Columns 3 and 4 indicate the p value and adjusted p value calculated by the differentialDeviations function in chromVAR; Column 5 shows the difference between the mean of bias corrected deviations in the cluster of interest and the mean of bias corrected deviations in all other clusters.
Source: Figshare
Institutions: Jiangnan University, Harvard University, University of Arizona, Northwestern Polytechnical University, Nanyang Technological University, Jilin University, Cornell University, Shanghai Stomatological Hospital, Ruian People's Hospital, First Affiliated Hospital of Xi'an Jiaotong University, Yunnan Academy of Agricultural Sciences, Heilongjiang Provincial Hospital, First Hospital of China Medical University, Jiangsu Province Hospital, First Affiliated Hospital of Harbin Medical University, Hubei Academy of Agricultural Sciences, Huazhong University of Science and Technology, Zhejiang University, Chongqing Medical University
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4394092517