Additional file 5: Table S4. of Chromosome contacts in activated T cells identify autoimmune disease candidate genes
Year: 2017
Type: dataset
Abstract: PCHi-C interactions called with the CHiCAGO pipeline. Annotation for baited fragments is given in Additional file 4: Table S3. PIRs are called other ends (‘oe’). CHICAGO scores for activated (‘Total_CD4_Activated’) and non-activated (‘Total_CD4_NonActivated’) CD4+ T cells were considered called with confidence if above 5. We also conducted differential analysis, and the read counts input into that are given by the columns P1.non - P3.act, with the results summarised by their log fold change (logFC) and FDR. Bait-PIR pairs are shown only if the CHiCAGO score is ≥ 5 for at least one CD4+ T cell. (GZ 14529 kb)
Source: Figshare
Authors: Burren, Oliver, García, Arcadio Rubio, Biola-Maria Javierre, Rainbow, Daniel, Cairns, Jonathan, Cooper, Nicholas, Lambourne, John, Schofield, Ellen, Xaquin Castro Dopico, Ferreira, Ricardo, Coulson, Richard, Burden, Frances, Rowlston, Sophia, Downes, Kate, Wingett, Steven, Frontini, Mattia, Ouwehand, Willem, Fraser, Peter, Spivakov, Mikhail, Todd, John, Wicker, Linda, Cutler, Antony, Wallace, Chris
Language: English
Subfield: Molecular Biology
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4394126264