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Additional file 11 of Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

Year: 2020

Type: dataset

Abstract: Additional file 11: Table S9. The SR1 and GN02 metapangenomes. (a) Reference information on GN02 genomes used for analysis. (b) Reference information on SR1 genomes used for analysis. (c) Summary information of GN02 pangenome. (d) Summary information of SR1 pangenome. (e) Average nucleotide identity (ANI) pairwise coverage values for the 25 GN02 genomes. (f) ANI percent identity values for the GN02 genomes. (g) ANI pairwise coverage values for the 14 SR1 genomes. (h) ANI percent identity values for the SR1 genomes. (i) Occurrence summary for the GN02 genomes in the HMP oral metagenomes. (j) Non-outlier mean coverage of the GN02 genomes in the HMP samples as computed by anvi-mcg-classifier. (k) The portion of reads that mapped to each GN02 genome from each of the HMP samples. (l) Occurrence summary for the SR1 genomes in the HMP oral metagenomes. (m) Non-outlier mean coverage of the SR1 genomes in the HMP samples as computed by anvi-mcg-classifier. (n) The portion of reads that mapped to each GN02 genome from each of the HMP samples.

Source: Figshare

DOI: 10.6084/m9.figshare.13467279

Authors: Shaiber, Alon, Willis, Amy D., Delmont, Tom O., Roux, Simon, Lin-Xing Chen, Schmid, Abigail C., Yousef, Mahmoud, Watson, Andrea R., Lolans, Karen, Esen, Özcan C., Lee, Sonny T. M., Downey, Nora, Morrison, Hilary G., Dewhirst, Floyd E., Welch, Jessica L. Mark, Eren, A. Murat

Language: English

Topic: Oral microbiology and periodontitis research

Subfield: Periodontics

Field: Dentistry

Domain: Health Sciences

SDG: Good health and well-being

Open Access status: green

OpenAlex ID: W4394136103

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