Metatranscriptomic sequencing of single mosquitos in California
Year: 2020
Type: dataset
Abstract: Data associated to a study of the microbiota of 148 single mosquitos gathered in California. Manifest: * Assembled contig files (contigs.zip)* CD-HIT-EST clusters of contigs > 500 base pairs long. (500_contigs_cluster.clstr)* Read counts per contig (contig_stats_all.tsv)* Least Common Ancestor (LCA) assignments for each contig (contig_stats_lca.tsv)* Sample Demographics (sample_demographics.xlsx)* Sequence yields per mosquito (read_stats_per_sample.xlsx)* SNP distance matrices between samples (snp_distances.tsv)* Underlying data: Treemap (treemap.tsv)* Viral taxa detected (virus_details.tsv)* Underlying data: peribunya figure (source_data_for_perbunya_figure.zip)* Branch length contributions: alignments and phylogenetic trees (branch_length.zip)* Branch length contributions: figures of each tree (branch_length_trees.zip)* Per-mosquito nonhost reads for select taxa (select_taxa_nonhost_reads.zip)* Viral segments found, grouped by genome, including sample and contig information. (virus.json)* Blood meal species calls and blood meal parasites (bloodmeal.zip)* Output of co-occurrence analysis (co-occurrence.xlsx)* Narnavirus analysis (narnavirus.zip)* Wuhan Mosquito Virus 6 phylogenetic trees (wmv6_trees.zip)* Mosquito genomes used for host subtraction (mosquito_genomes_ref.txt)
Source: Figshare
Language: English
Subfield: Insect Science
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4394194482