Table S2 from Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells
Year: 2019
Type: dataset
Abstract: All potential LINE-1 insertions. Each row is an insertion site that is either in the ’gold standard’ list or predicted with probability at least 0.1 in one experiment. Insertion sites within 100bp are merged. Columns D-V are the probability score of the insertion in each experiment. Column W indicates whether an insertion is in the gold standard list and if yes, whether it is a part of the reference genome assembly. Column X indicates if the insertion is in gold standard list. Column Y indicates whether the insertion is in a RepeatMasker annotated repeat and if so, which repeat family. Column Z indicates the distance to the nearest L1Hs in euL1db. Column AA indicates the distance to the nearest L1Hs on same strand in euL1db. Column AB indicates if the insertion is in or within 25bp of L1PA2 to L1PA4. Column AC indicates if the insertion is in a segmental duplication with over 95% identity.
Source: Figshare
Language: English
Subfield: Plant Science
Domain: Life Sciences
Open Access status: green
OpenAlex ID: W4394209944