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Omnitrophota marker gene trees

Year: 2022
Type: dataset
Abstract: Phylogenetic trees associated with Omnitrophota marker genes. All trees are newick format. rooted-16-tree.nwk : Rooted 16S rRNA gene tree. bac120-alignment-hmq-trimal.faa.treefile: Bac120 marker alignment of high and medium quality species cluster representatives. bcg110-alignment-hmq-trimal.faa.treefile: "Bacterial core genome" bcg110 marker alignment of high and medium quality species cluster representatives. ubcg-alignment-hmq-trimal.faa.treefile: "Up-to-date bacterial core genome" ubcg marker alignment of high and medium quality species cluster representatives. uni56-alignment-hmq-trimal.faa.treefile: "universal" 56 marker alignment of high and medium quality species cluster representatives.
Source: Figshare
DOI: 10.6084/m9.figshare.19918432
Authors: Seymour, Cale, Palmer, Marike, Becraft, Eric D., Stepanauskas, Ramunas, Friel, Ariel D., Schulz, Frederik, Woyke, Tanja, Eloe-Fadrosh, Emiley, Lai, Dengxun, Jiao, Jian-Yu, Hua, Zheng-Shuang, Liu, Lan, Lian, Zheng-Han, Li, Wen-Jun, Chuvochina, Maria, Finley, Brianna, Koch, Benjamin J., P. Moser, Duane, Hungate, Bruce A., Hedlund, Brian P.
Institutions: Bigelow Laboratory for Ocean Sciences, Joint Genome Institute, Zhongnan Hospital of Wuhan University, Sun Yat-sen University, Chongqing Medical University, Northern Arizona University
Language: English
Open Access status: green
OpenAlex ID: W4394381160
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